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Recent Publications

Cell-penetrating Helical Peptides Having L-Arginines and Five-membered Ring α,α-Disubstituted α-Amino Acids

Takuma Kato, Makoto Oba, Koyo Nishida, and Masakazu Tanaka, Bioconjugate Chem., Just Accepted Manuscript DOI: 10.1021/bc5003949 Publication Date (Web): September 4, 2014 Copyright © 2014 American Chemical Society

Cell-penetrating peptides are powerful tools in the delivery of drugs, proteins, and nucleic acids into cells; therefore, a focus has recently been placed on their development. In this study, we synthesized seven types of peptides possessing three L-arginines (L-Arg) and six L-leucines (L-Leu) and/or 1-aminocyclopentane-1-carboxylic acids (Ac5c), and investigated their secondary structures and cell-penetrating abilities. The peptide composed of an equal number of L-Arg, L-Leu, and Ac5c formed 310/α-helical structures in TFE solution and exhibited the highest cell-penetrating ability of all the peptides examined. Additional cellular uptake studies revealed that the incorporation of Ac5c into peptides led to improved tolerability against serum. The results of the present study will help in the design of novel cell-penetrating peptides.

Z-selective olefin metathesis on peptides: investigation of side-chain influence, preorganization, and guidelines in substrate selection.

Mangold SL, O'Leary DJ, Grubbs RH., J Am Chem Soc., 2014 Sep 3;136(35):12469-78. doi: 10.1021/ja507166g. Epub 2014 Aug 20.

Olefin metathesis has emerged as a promising strategy for modulating the stability and activity of biologically relevant compounds; however, the ability to control olefin geometry in the product remains a challenge. Recent advances in the design of cyclometalated ruthenium catalysts has led to new strategies for achieving such control with high fidelity and Z selectivity, but the scope and limitations of these catalysts on substrates bearing multiple functionalities, including peptides, remained unexplored. Herein, we report an assessment of various factors that contribute to both productive and nonproductive Z-selective metathesis on peptides. The influence of sterics, side-chain identity, and preorganization through peptide secondary structure are explored by homodimerization, cross metathesis, and ring-closing metathesis. Our results indicate that the amino acid side chain and identity of the olefin profoundly influence the activity of cyclometalated ruthenium catalysts in Z-selective metathesis. The criteria set forth for achieving high conversion and Z selectivity are highlighted by cross metathesis and ring-closing metathesis on diverse peptide substrates. The principles outlined in this report are important not only for expanding the scope of Z-selective olefin metathesis to peptides but also for applying stereoselective olefin metathesis in general synthetic endeavors.

O-Acyl isopeptide method: development of an O-acyl isodipeptide unit for Boc SPPS and its application to the synthesis of Aβ1-42 isopeptide.

Yoshiya T, Uemura T, Maruno T, Kubo S, Kiso Y, Sohma Y, Kobayashi Y, Yoshizawa-Kumagaye K, Nishiuchi Y., J. Pept. Sci., 2014, 20, 669-74. doi: 10.1002/psc.2662. Epub 2014 May 28.

The O-acyl isopeptide method was developed for the efficient preparation of difficult sequence-containing peptide. Furthermore, development of the O-acyl isodipeptide unit for Fmoc chemistry simplified its synthetic procedure by solid-phase peptide synthesis. Here, we report a novel isodipeptide unit for Boc chemistry, and the unit was successfully applied to the synthesis of amyloid β peptide. Combination of Boc chemistry and the isodipeptide unit would be an effective method for the synthesis of many difficult peptides. Copyright © 2014 European Peptide Society and John Wiley & Sons, Ltd.

Taximin, a conserved plant-specific peptide is involved in the modulation of plant-specialized metabolism.

R, Goethals M, Gevaert K, Moyano E, Vidal-Limon H, Cusidó RM, Palazón J, Goossens A, Plant Biotechnol. J., 2014, 12, 971-83. doi: 10.1111/pbi.12205. Epub 2014 May 23.

Small peptides play important roles in the signalling cascades that steer plant growth, development and defence, and often crosstalk with hormonal signalling. Thereby, they also modulate metabolism, including the production of bioactive molecules that are of high interest for human applications. Yew species (Taxus spp.) produce diterpenes such as the powerful anticancer agent paclitaxel, the biosynthesis of which can be stimulated by the hormone jasmonate, both in whole plants and cell suspension cultures. Here, we identified Taximin, as a gene encoding a hitherto unreported, plant-specific, small, cysteine-rich signalling peptide, through a transcriptome survey of jasmonate-elicited T. baccata suspension cells grown in two-media cultures. Taximin expression increased in a coordinated manner with that of paclitaxel biosynthesis genes. Tagged Taximin peptides were shown to enter the secretory system and localize to the plasma membrane. In agreement with this, the exogenous application of synthetic Taximin peptide variants could transiently modulate the biosynthesis of taxanes in T. baccata cell suspension cultures. Importantly, the Taximin peptide is widely conserved in the higher plant kingdom with a high degree of sequence conservation. Accordingly, Taximin overexpression could stimulate the production of nicotinic alkaloids in Nicotiana tabacum hairy root cultures in a synergistic manner with jasmonates. In contrast, no pronounced effects of Taximin overexpression on the specialized metabolism in Medicago truncatula roots were observed. This study increases our understanding of the regulation of Taxus diterpene biosynthesis in particular and plant metabolism in general. Ultimately, Taximin might increase the practical potential of metabolic engineering of medicinal plants.

Epitope mapping of the N-terminal portion of tissue transglutaminase protein antigen to identify linear epitopes in celiac disease.

Di Pisa M1, Buccato P, Sabatino G, Real Fernández F, Berti B, Cocola F, Papini AM, Rovero P, J. Pept. Sci., 2014, 20, 689-95. doi: 10.1002/psc.2650. Epub 2014 May 15.

Celiac disease (CD) is an autoimmune mediated disease with complex and multifactorial etiology. Gluten intake triggers a composite immune response involving T-cells and B-cells and leading to the secretion of autoantibodies if a genetic predisposition is present. Untreated CD patients show high levels of circulating autoantibodies directed to different auto-antigens present in the intestinal mucosa. The most important auto-antigen is the endomysial enzyme tissue transglutaminase (tTG). Both IgA and IgG antibody isotypes to tTG are known, but only the IgA antibodies demonstrate the highest disease specificity and thus are considered disease biomarkers. Because the pathogenicity and exact tTG binding properties of these autoantibodies are still unclear, the characterization of tTG antigenic domains is a crucial step in understanding CD onset and the autoimmune pathogenesis. Overlapping peptide libraries can be used for epitope mapping of selected protein portions to determine antigenic fragments contributing to the immunological activity and possibly develop innovative peptide-based tools with high specificity and sensitivity for CD. We performed an epitope mapping study to characterize putative linear auto-antigenic epitopes present in the tTG N-terminal portion (1-230). A library of 23 overlapping peptidesspanning tTG(1-230) was generated by Fmoc/tBu solid-phase peptide synthesis and screened by immunoenzymatic assays employing patients' sera. The results indicate that four synthetic peptides, that is, Ac-tTG(1-15)-NH2 , Ac-tTG(41-55)-NH2 , Ac-tTG(51-65)-NH2 , and Ac-tTG(151-165)-NH2 , are recognized by IgA autoantibodies circulating in CD patients' sera. These results offer important insight on the nature of the antigen-antibody interaction. Copyright © 2014 European Peptide Society and John Wiley & Sons, Ltd.

 

 

 

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β-Amino Acids and β-Homoamino Acids

Beta-amino acids and beta-homoamino acids incorporated into peptides can increase resistance to digestive enzymes, improve selectivity, enhance potency and increase metabolic stability, making them interesting drug candidates. Antibactials, opioid peptide analogs, and drugs for cancer treatment are a few examples of the applications of ß-peptides. (K. Stachowiak, et al., J Med Chem. 1979, 22, 1128-30; KM Bromfield, et al., Chem Biol Drug Des. 2006, 68, 11-9; S Nordhoff, et al., Bioorg Med Chem Lett. 2009, 19, 6340-5; MA Ondetti, SL Engel, J Med Chem. 1975, 18, 761-3; D Janke, et al., Bioorg. Med. Chem., 2011, 19, 7236).

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UPCOMING EVENTS

November 2014

Peptide Drug Design and Delivery Congress

November 5-6
San Diego, California

34th International Symposium on the Separation of Proteins, Peptides and Polynucleotides

November 5-7
Wuertsburg, Germany